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Karyotyping
 

Abortus Material:

Abortus material is tested for the people who had the cases of previous Abortions, known paternal chromosomal abnormalities, previous deliveries
of children with chromosomal abnormalities.

The cytogenetic analyses (Karyotyping) of the abortus material provide important information about the recurrence risks and possible management for the couples with recurrent spontanous abortions. The methods of cytogenetic analyses depend on primarily cell culture that has relatively higher (10- 40%) failure. The most common chromosomal abnormalities in abortus materials are numerical chromosomal abnormalities.

More than 50% of spontaneous abortions have chromosomal abnormalities including primarily numerical abnormalities such as autosomal trisomies (29%), monosomy X (10%), polyploidy (10%) and mosaicism or structural chromosomal abnormalities (2%). The cytogenetic analyses of the abortus material provide valuable information about the recurrence risks and possible therapies for the couples with recurrent spontaneous abortions. The cytogenetic detections depend on providing viable tissue to perform primary culture and harvest metaphase chromosomes. The methods of the cell culture and chromosomal analyses are well described and accepted as a diagnostic method for last four decades. It is well known that these applications had some limitations such as relatively higher (10-40%) tissue culture failure and providing karyotypes not presenting concepts due to selective overproduction of maternal cells.

Amniotic Fluid:

Amniotic fluid is analyzed when the maternal age > 35 years, previous abortions or missed abortions, paternal chromosomal structural abnormalities, malformation, diagnostic findings (PAPP-A, Trple test), abnormal ultrasound, previous delivery of children with chromosomal abnormalities, previous delivery of children with malformation, mutagenic exposure during pregnancy.

Karyotyping looks at cells under a microscope to study the size, shape, and number of chromosomes, which are the thin strands in the center (nucleus) of most of the cells in the body. A person normally has 46 chromosomes. The chromosomes carry genetic information that determines a person's inherited features, such as sex, eye color, and blood type. Each chromosome is made up of many sections called genes. Extra or missing pieces of a chromosome can cause problems with a person's development and growth and with any of the body's functions.

Karyotyping can be done on most other cells in the body, but usually it is done on white blood cells (lymphocytes). It also can be done on cells taken from a tissue sample (such as skin or bone marrow), from amniotic fluid, or from chorionic villi sampling (CVS).

To test amniotic fluid, an amniocentesis is performed. Testing on placental tissue is done after chorionic villous sampling or after a miscarriage.


Ataxia Telengiectasia:

Ataxia-telangiectasia is a rare, childhood neurological disorder that causes degeneration in the part of the brain that controls motor movements and speech. Its most unusual symptom is an acute sensitivity to ionizing radiation, such as X-rays or gamma-rays. The first signs of the disease, which include delayed development of motor skills, poor balance, and slurred speech, usually occur during the first decade of life. Telangiectasias (tiny, red "spider" veins), which appear in the corners of the eyes or on the surface of the ears and cheeks, are characteristic of the disease, but are not always present and generally do not appear in the first years of life. About 20% of those with A-T develop cancer, most frequently acute lymphocytic leukemia or lymphoma. Many individuals with A-T have a weakened immune system, making them susceptible to recurrent respiratory infections. Other features of the disease may include mild diabetes mellitus, premature graying of the hair, difficulty swallowing, and delayed physical and sexual development. Children with A-T usually have normal or above normal intelligence.

Blood Karyotyping can be done on the people showing symptoms of abnormal co-ordination of limbs becomes(peripheral ataxia), slurred speech, eye movements, lower intellect, immune problems.

Blood Chromosomes:

Karyotyping is a standard arrangement of photographic or computer-generated images of chromosome pairs from a cell in ascending numerical order, from largest to smallest. Chromosome abnormalities can be numerical, as in the presence of extra or missing chromosomes, or structural, as in translocations, inversions, large-scale deletions or duplications. Numerical abnormalities, also known as aneuploidy, often occur as a result of nondisjunction during meiosis in the formation of a gamete; trisomies, in which three copies of a chromosome are present instead of the usual two, are common numerical abnormalities. Structural abnormalities often arise from errors in homologous recombination. Both types of abnormalities can occur in gametes and therefore will be present in all cells of an affected person's body, or they can occur during mitosis and give rise to a genetic mosaic individual who has some normal and some abnormal cells.


Chromosome analysis is an important component in the diagnosis and evaluation of genetic disorders. Chromosome abnormalities in which there is too much or too little genetic material can result in congenital malformations, mental retardation, or aberrant sexual differentiation.

Chromosome disorders occur in approximately 1 in 150 liveborns and are a significant cause of mental retardation and dysmorphic features. In addition, over 50% of first trimester spontaneous abortions are due to a fetal chromosome abnormality.

Karyotyping is used to detect infertility, deliver of children with chromosomal abnormalities, recurrent abortions, abnormal findings in prenatal chromosomal analysis, suspicion of Dysmorphic Syndrome, Suspicion of gonosomal abnormalities.

Bone Marrow Chromosome:

Chromosome analysis is indicated for individuals with particular leukemias and hematologic disorders. A chromosome analysis on bone marrow or leukemic blood may be helpful in defining the specific form of leukemia and/or may aid in providing prognostic information. In patients who have had a bone marrow transplant,Leukemia and hematological disorders, chromosome analysis may be useful in monitoring engraftment or hematological disorders.


Chorionic Villi Samples (Long term culture):

Chorionic villus sampling (CVS), also known as chorionic villus biopsy, is a prenatal test that can detect genetic and chromosomal abnormalities of an unborn baby.

Chorionic villus sampling is best performed between 10 and 12 weeks of pregnancy. The procedure is performed either through the vagina and the cervix (transcervically) or through the abdomen (transabdominally) depending upon the preferences of the patient or the doctor. In some cases, the location of the placenta dictates which method the doctor uses. Both methods are equally safe and effective. Following the preparation time, both procedures take only about five minutes. Women undergoing chorionic villus sampling may experience no pain at all or feel cramping or pinching. Occasionally, a second sampling procedure must be performed if insufficient villus material was obtained.

Cord blood Prenatal- (chromosome):

Prenatal diagnosis employs a variety of techniques to determine the health and condition of an unborn fetus. Without knowledge gained by prenatal diagnosis, there could be an untoward outcome for the fetus or the mother or both. Congenital anomalies account for 20 to 25% of perinatal deaths. Specifically, prenatal diagnosis is helpful for:

• Managing the remaining weeks of the pregnancy
• Determining the outcome of the pregnancy
• Planning for possible complications with the birth process
• Planning for problems that may occur in the newborn infant
• Deciding whether to continue the pregnancy
• Finding conditions that may affect future pregnancies

Falconi’s Anemia (Mitomycin Assay):

Fanconi anemia is a blood disorder characterized by pancytopenia (deficiency of red blood cells, white blood cells and platelets), increased risk for cancer, and congenital birth defects. The disease is highly variable and is frequently associated with cardiac, kidney and limb abnormalities. Short stature is commonly observed in children and adults with Fanconi anemia, and other growth measurements may also be below normal. Bleeding episodes and bruising are common, as are hormonal problems and infertility. The majority of individuals with Fanconi anemia are diagnosed during childhood, but many do not survive beyond young adulthood. This is frequently a result of leukemia or other cancers, which are due to bone marrow failure.

Cytogenetic analysis is used to reveal chromosome breakage, which is characteristic of Fanconi anemia. Recently the carrier of Fanconi anemia can be identified after the gene for Fanconi anemia was isolated on chromosome 9.


Fibroblast culture for other test:

In children or adults with skin disorders like inherited ichthyosis/epidermal bullosa, or enzyme defects, a skin biospy is needed for an accurate diagnosis. Some metabolic diseases or chromosomal disorders also require skin fibroblast culture for accurate analysis. This is performed on OPD basis.

Fragile X Syndrome- Thymidine:

Fragile X is a family of genetic conditions, which can impact individuals and families in various ways. These genetic conditions are related in that they are all caused by gene changes in the same gene, called the FMR1 gene.

Fragile X syndrome (FXS) is the most common cause of inherited mental impairment. This impairment can range from learning disabilities to more severe cognitive or intellectual disabilities. (Sometimes referred to as mental retardation.) FXS is the most common known cause of autism or "autistic-like" behaviors. Symptoms also can include characteristic physical and behavioral features and delays in speech and language development.

Fragile X-associated tremor/ataxia syndrome (FXTAS) is a condition which affects balance, tremor and memory in some older male gene carriers.

Fragile X-associated primary ovarian insufficiency (FXPOI) is a problem with ovarian function which can lead to infertility and early menopause in some female gene carriers.

Some gene carriers do not exhibit any of these features. Fragile X can be passed on in a family by individuals who have no apparent signs of this genetic condition. In some families a number of family members appear to be affected, whereas in other families a newly diagnosed individual may be the first family member to exhibit symptoms.

Prader willi Syndrome- microdeletion chrom 15:

Prader-Willi syndrome (abbreviated PWS) is a very rare genetic disorder, in which seven genes (or some subset thereof) on chromosome 15 are missing or unexpressed (chromosome 15q partial deletion) on the paternal chromosome.

Prader-Willi syndrome is also frequently associated with an extreme and insatiable appetite, often resulting in morbid obesity. There is currently no consensus as to the cause for this particular symptom, although genetic abnormalities in chromosome 15 disrupt the normal functioning of the hypothalamus. Given that the hypothalamus regulates many basic processes, including appetite, there may well be a link. However, no organic defect of the hypothalamus has been discovered on post mortem investigation.

Newborn with muscular hypotonia, children with obesity, mental retardation, short stature, hygonadotropic hypogonadism are tested for the syndrome by using cytogenetic analysis..

Recurrent Abortion (husband and wife):

Spontaneous abortion occurs in 12 to 15 percent of all pregnancies. A subset of patients habitually abort in the first or second trimester. Studies have shown that the risk of recurrent spontaneous abortion is much higher in this subset. Family physicians are likely to encounter the problem of recurrent spontaneous abortion and must address both the medical and psychosocial implications. This article reviews the literature and offers an approach to the management of patients with recurrent spontaneous abortion.

The most common cause of sporadic spontaneous abortion is a chromosomal abnormality of the fetus. More than 60 percent of first-trimester fetal losses show some type of cytogenetic abnormality. The most common abnormality is aneuploidy (an abnormal chromosomal composition), with autosomal trisomy accounting for more than 50 percent of chromosomally abnormal abortuses. Other common types of aneuploidy include XO, XXX, XXY and XYY. Polyploidy accounts for approximately 22 percent of chromosomally abnormal abortuses. Triploidy (3n = 69 chromosomes) is approximately three times more common than tetraploidy (4n = 92 chromosomes).

People suffering from infertility, delivery of children with chromosomal abnormalities, recurrent abortions, abnormal findings in prenatal chromosomal analysis, suspicion of Dysmorphic Syndrome, Suspicion of gonosomal abnormalities are advised to analyze their chromosomes..
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