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What is Genomics?
Genomics is the study of the DNA, Genes,
and Chromosomes which make up the complete set of
genetic instructions, the genome, contained within
nearly every cell in your body. But, as with so many
questions in science, this answer leads to new questions.
DNA
The best way to think of DNA is as a long molecule
made of a chain of 4 smaller molecules called nucleotides,
symbolized by the letters, A, T, C, and G. These letters
store instructions on how to make proteins and ultimately,
how to make you. Our DNA molecules are organized into
a double helix structure which resembles a spiral
staircase. However, with this staircase, there are
certain rules that dictate which letters can sit across
from each other on each step, rules which help in
reading and replicating your DNA instructions. The
rules strictly require that the letter “A”
must be opposite the letter “T”, and the
letter “G” opposite the letter “C”.
In this way, it is possible to read one half of the
“staircase” and know precisely what the
other half should look like. In fact, this is the
basic idea behind how your DNA is copied when your
cells divide.
Genes
Genes are simply long sequences of DNA “letters”
which provide instructions for making protein and
proteins perform countless tasks within your cells,
from providing structural support, to breaking down
waste. It is the sequence of the DNA “letters”
within each gene that affects the way the instructions
are interpreted in terms of the proteins that are
produced. This is analogous to the manner we interpret
words on a page. For example, the same four letters
are in the words, “mate” and “team,”
but the sequence of the letters affects our interpretation
of their meanings. On the other hand, sometimes a
difference in a genetic sequence does not lead to
a change in the protein. The analogy holds with words
like, “color” and “colour”
for example. These words have different spellings
but are interpreted identically.
Chromosomes
As we move from DNA to Genes and from Genes to Chromosomes,
we are basically zooming out from a highly magnified
view of your DNA to a much wider view. Scientifically
speaking, Chromosomes are extremely long interwoven
and highly coiled pieces of DNA, the longest continuous
pieces of DNA in our cells. But, if we carry the previous
analogy of genes resembling words and sentences a
little further, then it follows that chromosomes can
be thought of as complete chapters in the story of
you. They are composed of many words (genes), they
have a clear beginning and ending, and to an extent
they can stand alone as a discrete unit that tells
part of the story of your life.
Genome
As we zoom further out from individual DNA molecules,
past the chromosome level, we can see that we have
multiple chromosomes, 46 to be exact (23 pairs), and
the summation of these chromosomes make up what is
considered to be your genome. You can then infer that
your genome is composed of all your DNA, Genes, and
Chromosomes and it follows that Genomics is the study
of these three levels of genetic material. Going back
to our analogy, you can think of your genome as being
analogous to your complete autobiography. It consists
of 23 chapters, albeit with two copies of each one,
and it tells the complete story of you.
SNP's
SNP is short for Single Nucleotide Polymorphism and
is pronounced “snip” but, it's not as
complicated as it sounds. As previously mentioned,
a nucleotide is simply one of the four letters of
DNA, A, T, C, or G. The word Polymorphism is really
just a fancy way of saying, “many forms”.
Therefore, a single nucleotide polymorphism is just
a single letter of DNA, in a specific location, that
can take many forms, i.e. it can be an A, T, C, or
G. SNP's are significant to scientists because the
vast majority of human DNA, from one individual to
the next, is the same at a given location. Therefore,
it is these SNP’s, these places that vary by
a single letter, which differentiate individuals and
to a large extent, account for the unique characteristics
of you. SNP’s amount to a single-letter change
in the spelling of a “protein word” and
as we noted earlier, sometimes a change alters the
meaning of the word and sometimes it doesn’t
but, in either case, SNP’s can tell us a small
part of your genetic story.
What is Genomic Profiling Test?
Genomic profilng test is the concurrent detection
of multiple gene variants that have been associated
with predisposition to a particular disease. Virtually
all-human diseases result from the interaction of
genetic susceptibility and modifiable environmental
factors, broadly defined to include infectious, chemical,
physical, nutritional, and behavioral factors. Genetic
variants, SNPs, are associated with almost all diseases,
though they do not cause disease but influence a person's
susceptibility to specific environmental factors that
increase disease risk.
Health conditions are not caused by genes alone.
Instead, they develop when many potentially harmful
factors-both genetic and environmental-interact over
a long period of time. Only by considering all of
these factors together can a person accurately estimate
his or her unique health risks and take the right
steps to help prevent chronic disease from developing.
Importance of Genomic Profiling
The increasing understanding of genomic profiles has
the potential to usher in a revolution of personalized
healthcare and disease prevention. The assumption
driving this increased intensity in genomics research
is that individuals will be able to use their genomic
profiles to reduce their risk of common conditions,
such as heart disease, diabetes and obesity, or to
improve overall health and well-being.
Advances in genetics and the sequencing of the human
genome will ultimately result in a comprehensive understanding
of the molecular underpinnings of human development,
health and disease. Hundreds of reports of gene-disease
associations have already been published, and knowledge
about the interactions between genetic and environmental
factors is increasing day by day.
Genomic profiles, one of the newest approaches to
personalized medicine, consists of the concurrent
detection of multiple gene variants that have been
associated with greater risk or predisposition to
a particular disease or condition. The profiles are
proposed as a means to identify individual risk, for
the purpose of tailoring specific risk-reducing actions,
typically involving vitamins, environmental exposures,
diet or other lifestyle changes that are expected
to prevent disease.
How gene variation help to diagnose
a disease?
Each person's genetic material contains a unique
SNP pattern that is made up of many different genetic
variations. Researchers have found that most SNPs
are not responsible for a disease state. Instead,
they serve as biological markers for pinpointing a
disease on the human genome map, because they are
usually located near a gene found to be associated
with a certain disease. Occasionally, a SNP may actually
cause a disease and, therefore, can be used to search
for and isolate the disease-causing gene.
To create a genetic test that will screen for a disease
in which the disease-causing gene has already been
identified, scientists collect blood samples from
a group of individuals affected by the disease and
analyze their DNA for SNP patterns. Next, researchers
compare these patterns to patterns obtained by analyzing
the DNA from a group of individuals unaffected by
the disease. This type of comparison, called an "association
study", can detect differences between the SNP
patterns of the two groups, thereby indicating which
pattern is most likely associated with the disease-causing
gene. Eventually, SNP profiles that are characteristic
of a variety of diseases will be established. Then,
it will only be a matter of time before physicians
can screen individuals for susceptibility to a disease
just by analyzing their DNA samples for specific SNP
patterns.
How Genetic variation (SNPs)
help in Drug Development?
As mentioned earlier, SNPs may also be associated
with the absorbance and clearance of therapeutic agents.
Currently, there is no simple way to determine how
a patient will respond to a particular medication.
A treatment proven effective in one patient may be
ineffective in others. Worse yet, some patients may
experience an adverse immunologic reaction to a particular
drug. Today, pharmaceutical companies are limited
to developing agents to which the "average"
patient will respond. As a result, many drugs that
might benefit a small number of patients never make
it to market.
In the future, the most appropriate drug for an individual
could be determined in advance of treatment by analyzing
a patient's SNP profile. The ability to target a drug
to those individuals most likely to benefit, referred
to as "personalized medicine", would allow
pharmaceutical companies to bring many more drugs
to market and allow doctors to prescribe individualized
therapies specific to a patient's needs.
Courtesy: http://www.cancer.gov/templates/db_alpha.aspx?CdrID=561401,
http://www.genomicprofiles.com/, Please visit the website
for further information
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